MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJNA439311

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA439311

AttributeValue
SRA Study IDSRP136124
Disease(s)Chronic Obstructive Pulmonary Disease (COPD) → COPD Stable
Chronic Obstructive Pulmonary Disease (COPD) → COPD Six Months from First Stable Visit
Chronic Obstructive Pulmonary Disease (COPD) → COPD Exacerbation
Chronic Obstructive Pulmonary Disease (COPD) → COPD Two Week Post Exacerbation
Chronic Obstructive Pulmonary Disease (COPD) → COPD Six Week Post Exacerbation
Healthy → Healthy Smoker
Healthy → Healthy Non Smoker
Isolation SourceSputum
Body siteLower Respiratory Tract
Assay TypeAmplicon-16S
InstrumentIllumina MiSeq
Library LayoutPAIRED
Year2020
Processed Runs102
Variable RegionV4
PMID31170986
CountryUnited Kingdom

Analyses

Taxonomic profile
Discriminant analysis
Multivariate association analysis
Microbial co-occurrence analysis

Download

Biom file

Summary of runs

Total number of processed runs found in the database for this BioProject ID = 102

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