MDPD - Microbiome Database of Pulmonary Diseases

BioProject ID: PRJDB13936

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJDB13936

AttributeValue
SRA Study IDDRP008773
Disease(s)COVID-19 → COVID-19 Critical
COVID-19 → COVID-19 Non Critical
Isolation SourceStool
BiomeGut
Assay TypeAmplicon-16S
InstrumentIllumina MiSeq
Library LayoutPAIRED
Year2022
Processed Runs10
Variable Region
PMID38505560
CountryJapan

Analyses

Taxonomic profile
Discriminant analysis
Microbial co-occurrence analysis

Download

Biom file

Summary of runs

Total number of processed runs found in the database for this BioProject ID = 10

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Run IDBioProject IDDiseaseDisease Sub-groupBiomeInstrumentAssay TypeLibrary LayoutProcessed Reads (%)CountryYear
DRR394970 PRJDB13936 COVID-19COVID-19 Non CriticalGutIllumina MiSeqAmplicon-16SPAIRED45Japan2022
DRR394971 PRJDB13936 COVID-19COVID-19 Non CriticalGutIllumina MiSeqAmplicon-16SPAIRED35Japan2022
DRR394972 PRJDB13936 COVID-19COVID-19 Non CriticalGutIllumina MiSeqAmplicon-16SPAIRED30Japan2022
DRR394973 PRJDB13936 COVID-19COVID-19 CriticalGutIllumina MiSeqAmplicon-16SPAIRED40Japan2022
DRR394974 PRJDB13936 COVID-19COVID-19 CriticalGutIllumina MiSeqAmplicon-16SPAIRED21Japan2022
DRR394975 PRJDB13936 COVID-19COVID-19 CriticalGutIllumina MiSeqAmplicon-16SPAIRED31Japan2022
DRR394976 PRJDB13936 COVID-19COVID-19 CriticalGutIllumina MiSeqAmplicon-16SPAIRED34Japan2022
DRR394977 PRJDB13936 COVID-19COVID-19 CriticalGutIllumina MiSeqAmplicon-16SPAIRED33Japan2022
DRR394978 PRJDB13936 COVID-19COVID-19 Non CriticalGutIllumina MiSeqAmplicon-16SPAIRED31Japan2022
DRR394979 PRJDB13936 COVID-19COVID-19 Non CriticalGutIllumina MiSeqAmplicon-16SPAIRED31Japan2022
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