BioProject ID: PRJEB29062
https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJEB29062 
| Attribute | Value |
|---|---|
| SRA Study ID | ERP111330 |
| Disease(s) | Chronic Obstructive Pulmonary Disease (COPD) → COPD GOLD 1 Chronic Obstructive Pulmonary Disease (COPD) → COPD GOLD 2 Chronic Obstructive Pulmonary Disease (COPD) → COPD GOLD 4 Chronic Obstructive Pulmonary Disease (COPD) → COPD GOLD 3 Control → Non COPD |
| Isolation Source | BALF |
| Biome | Lower Respiratory Tract |
| Assay Type | Amplicon-16S |
| Instrument | Illumina MiSeq |
| Library Layout | PAIRED |
| Year | 2019 |
| Processed Runs | 41 |
| Variable Region | V3-V4 |
| PMID | 29992131 |
| Country | Switzerland |
Analyses
| Taxonomic profile | |
|---|---|
| Discriminant analysis | |
| Multivariate association analysis | |
| Microbial co-occurrence analysis |
Download
| Biom file |
|---|
Summary of runs
Total number of processed runs found in the database for this BioProject ID = 41
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| Run ID | BioProject ID | Disease | Disease Sub-group | Biome | Instrument | Assay Type | Library Layout | Processed Reads (%) | Country | Year |
|---|---|---|---|---|---|---|---|---|---|---|
| ERR2824943 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 16 | Switzerland | 2019 |
| ERR2824944 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 17 | Switzerland | 2019 |
| ERR2824945 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 20 | Switzerland | 2019 |
| ERR2824946 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 14 | Switzerland | 2019 |
| ERR2824947 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 14 | Switzerland | 2019 |
| ERR2824948 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 13 | Switzerland | 2019 |
| ERR2824949 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 13 | Switzerland | 2019 |
| ERR2824950 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 17 | Switzerland | 2019 |
| ERR2824951 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 16 | Switzerland | 2019 |
| ERR2824952 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 19 | Switzerland | 2019 |
| ERR2824953 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 11 | Switzerland | 2019 |
| ERR2824954 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 16 | Switzerland | 2019 |
| ERR2824955 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 7 | Switzerland | 2019 |
| ERR2824956 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 19 | Switzerland | 2019 |
| ERR2824957 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 9 | Switzerland | 2019 |
| ERR2824958 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 17 | Switzerland | 2019 |
| ERR2824959 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 8 | Switzerland | 2019 |
| ERR2824960 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 10 | Switzerland | 2019 |
| ERR2824961 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 9 | Switzerland | 2019 |
| ERR2824962 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 9 | Switzerland | 2019 |
| ERR2824963 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 6 | Switzerland | 2019 |
| ERR2824964 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 11 | Switzerland | 2019 |
| ERR2824965 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 26 | Switzerland | 2019 |
| ERR2824966 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 22 | Switzerland | 2019 |
| ERR2824967 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 25 | Switzerland | 2019 |
| ERR2824968 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 25 | Switzerland | 2019 |
| ERR2824969 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 21 | Switzerland | 2019 |
| ERR2824970 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 21 | Switzerland | 2019 |
| ERR2824971 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 24 | Switzerland | 2019 |
| ERR2824972 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 27 | Switzerland | 2019 |
| ERR2824973 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 16 | Switzerland | 2019 |
| ERR2824974 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 27 | Switzerland | 2019 |
| ERR2824975 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 10 | Switzerland | 2019 |
| ERR2824976 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 20 | Switzerland | 2019 |
| ERR2824977 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 23 | Switzerland | 2019 |
| ERR2824978 | PRJEB29062 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 21 | Switzerland | 2019 |
| ERR2824979 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 9 | Switzerland | 2019 |
| ERR2824980 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 34 | Switzerland | 2019 |
| ERR2824981 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 24 | Switzerland | 2019 |
| ERR2824982 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 4 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 21 | Switzerland | 2019 |
| ERR2824983 | PRJEB29062 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 19 | Switzerland | 2019 |
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