BioProject - MDPD

BioProject ID: PRJEB52317

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJEB52317

Attribute	Value
SRA Study ID	ERP137018
Disease(s)	Cystic Fibrosis → Cystic Fibrosis
Isolation Source	Sputum; Throat Swab; Nasal Lavage
Biome	Lower Respiratory Tract; Upper Respiratory Tract; Nasal
Assay Type	WMS
Instrument	Illumina NextSeq 550
Library Layout	SINGLE
Year	2023
Processed Runs	169
Variable Region
PMID	36892308
Country	Germany

Analyses

Taxonomic profile
Discriminant analysis
Microbial co-occurrence analysis

Download

Biom file

Summary of runs

Total number of processed runs found in the database for this BioProject ID = 169

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Run ID	BioProject ID	Disease	Disease Sub-group	Biome	Instrument	Assay Type	Library Layout	Processed Reads (%)	Country	Year
ERR10814733	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.97	Germany	2023
ERR10814734	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	7.65	Germany	2023
ERR10814735	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	66.1	Germany	2023
ERR10814736	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.15	Germany	2023
ERR10814737	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	10.3	Germany	2023
ERR10814738	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.18	Germany	2023
ERR10814739	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	4.97	Germany	2023
ERR10814740	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.7	Germany	2023
ERR10814741	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.75	Germany	2023
ERR10814742	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	9.04	Germany	2023
ERR10814743	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.51	Germany	2023
ERR10814744	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3	Germany	2023
ERR10814745	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.6	Germany	2023
ERR10814746	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	7.52	Germany	2023
ERR10814747	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.93	Germany	2023
ERR10814748	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.07	Germany	2023
ERR10814749	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.08	Germany	2023
ERR10814750	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.12	Germany	2023
ERR10814751	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3	Germany	2023
ERR10814752	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.27	Germany	2023
ERR10814753	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	7.42	Germany	2023
ERR10814754	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	4.08	Germany	2023
ERR10814755	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.66	Germany	2023
ERR10814756	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	11	Germany	2023
ERR10814757	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.45	Germany	2023
ERR10814758	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.48	Germany	2023
ERR10814759	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.5	Germany	2023
ERR10814760	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.52	Germany	2023
ERR10814761	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	4.74	Germany	2023
ERR10814762	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	2.02	Germany	2023
ERR10814763	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.55	Germany	2023
ERR10814764	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.96	Germany	2023
ERR10814765	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.57	Germany	2023
ERR10814766	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.87	Germany	2023
ERR10814767	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.36	Germany	2023
ERR10814768	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	17.2	Germany	2023
ERR10814769	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.75	Germany	2023
ERR10814770	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.41	Germany	2023
ERR10814771	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.51	Germany	2023
ERR10814772	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.89	Germany	2023
ERR10814773	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	6.7	Germany	2023
ERR10814774	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.31	Germany	2023
ERR10814775	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	15.8	Germany	2023
ERR10814776	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	7.62	Germany	2023
ERR10814777	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.73	Germany	2023
ERR10814778	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	2.62	Germany	2023
ERR10814779	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	7.23	Germany	2023
ERR10814780	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	4.39	Germany	2023
ERR10814781	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	7.3	Germany	2023
ERR10814782	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.05	Germany	2023
ERR10814783	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.97	Germany	2023
ERR10814784	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	4.71	Germany	2023
ERR10814785	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.7	Germany	2023
ERR10814786	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	6.25	Germany	2023
ERR10814787	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	10.1	Germany	2023
ERR10814788	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.78	Germany	2023
ERR10814789	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.35	Germany	2023
ERR10814790	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	6.22	Germany	2023
ERR10814791	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	8.84	Germany	2023
ERR10814792	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.82	Germany	2023
ERR10814793	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	66.8	Germany	2023
ERR10814794	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	4.74	Germany	2023
ERR10814795	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.74	Germany	2023
ERR10814796	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	5.25	Germany	2023
ERR10814797	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	3.34	Germany	2023
ERR10814798	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.74	Germany	2023
ERR10814799	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	4.36	Germany	2023
ERR10814800	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.43	Germany	2023
ERR10814801	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.47	Germany	2023
ERR10814802	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.4	Germany	2023
ERR10814803	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.41	Germany	2023
ERR10814804	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.42	Germany	2023
ERR10814805	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.89	Germany	2023
ERR10814806	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.35	Germany	2023
ERR10814807	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.47	Germany	2023
ERR10814808	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	1.55	Germany	2023
ERR10814809	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 550	WMS	SINGLE	4.19	Germany	2023
ERR10814810	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	2.03	Germany	2023
ERR10814811	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.36	Germany	2023
ERR10814812	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.45	Germany	2023
ERR10814813	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.52	Germany	2023
ERR10814814	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	3.04	Germany	2023
ERR10814815	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	2.05	Germany	2023
ERR10814816	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.39	Germany	2023
ERR10814817	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.66	Germany	2023
ERR10814818	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.81	Germany	2023
ERR10814819	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.4	Germany	2023
ERR10814820	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.47	Germany	2023
ERR10814821	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.43	Germany	2023
ERR10814822	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.39	Germany	2023
ERR10814823	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.31	Germany	2023
ERR10814824	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.88	Germany	2023
ERR10814825	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.76	Germany	2023
ERR10814826	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.58	Germany	2023
ERR10814827	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.43	Germany	2023
ERR10814828	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.65	Germany	2023
ERR10814829	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.52	Germany	2023
ERR10814830	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	1.98	Germany	2023
ERR10814831	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	5.71	Germany	2023
ERR10814832	PRJEB52317	Cystic Fibrosis	Cystic Fibrosis	Nasal	Illumina NextSeq 550	WMS	SINGLE	78.4	Germany	2023

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