BioProject ID: PRJNA590225
https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA590225 
| Attribute | Value |
|---|---|
| SRA Study ID | SRP230357 |
| Disease(s) | Bronchiectasis → Bronchiectasis |
| Isolation Source | Sputum |
| Biome | Lower Respiratory Tract |
| Assay Type | WMS |
| Instrument | Illumina HiSeq 2500 |
| Library Layout | PAIRED |
| Year | 2020 |
| Processed Runs | 133 |
| Variable Region | |
| PMID | 33820995 |
| Country | Singapore; United Kingdom; Malaysia; Italy |
Analyses
| Taxonomic profile | |
|---|---|
| Discriminant analysis | |
| Microbial co-occurrence analysis |
Download
| Biom file |
|---|
Summary of runs
Total number of processed runs found in the database for this BioProject ID = 133
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| Run ID | BioProject ID | Disease | Disease Sub-group | Biome | Instrument | Assay Type | Library Layout | Processed Reads (%) | Country | Year |
|---|---|---|---|---|---|---|---|---|---|---|
| SRR11233734 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 96.6 | Singapore | 2020 |
| SRR11661704 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.27 | United Kingdom | 2020 |
| SRR11661705 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 51.5 | United Kingdom | 2020 |
| SRR11661706 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 31.7 | United Kingdom | 2020 |
| SRR11661707 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.15 | United Kingdom | 2020 |
| SRR11661708 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 4.92 | Singapore | 2020 |
| SRR11661709 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 7.69 | Singapore | 2020 |
| SRR11661711 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 12.8 | United Kingdom | 2020 |
| SRR11661712 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 9.37 | United Kingdom | 2020 |
| SRR11661713 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.38 | United Kingdom | 2020 |
| SRR11661715 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.08 | United Kingdom | 2020 |
| SRR11661716 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 8.7 | Singapore | 2020 |
| SRR11661717 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 46 | Singapore | 2020 |
| SRR11661718 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 3.45 | Singapore | 2020 |
| SRR11661719 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 8.01 | Singapore | 2020 |
| SRR11661720 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 13.2 | Singapore | 2020 |
| SRR11661721 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 13.5 | Singapore | 2020 |
| SRR11661722 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.2 | Singapore | 2020 |
| SRR11661723 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 5.61 | Singapore | 2020 |
| SRR11661724 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 43 | Singapore | 2020 |
| SRR11661725 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 49.6 | Singapore | 2020 |
| SRR11661726 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 4.21 | Singapore | 2020 |
| SRR11661727 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 5.32 | Malaysia | 2020 |
| SRR11661728 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 22.1 | Malaysia | 2020 |
| SRR11661729 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 9.59 | Malaysia | 2020 |
| SRR11661730 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.81 | United Kingdom | 2020 |
| SRR11661731 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 7.21 | United Kingdom | 2020 |
| SRR11661733 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 18.9 | United Kingdom | 2020 |
| SRR11661734 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 11.8 | United Kingdom | 2020 |
| SRR11661735 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.37 | United Kingdom | 2020 |
| SRR11661736 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.17 | United Kingdom | 2020 |
| SRR11661737 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.42 | Singapore | 2020 |
| SRR11661738 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 6.91 | United Kingdom | 2020 |
| SRR11661739 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 3.76 | United Kingdom | 2020 |
| SRR11661740 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 22.3 | United Kingdom | 2020 |
| SRR11661741 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 29.7 | United Kingdom | 2020 |
| SRR11661742 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.59 | United Kingdom | 2020 |
| SRR11661743 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 4.32 | United Kingdom | 2020 |
| SRR11661744 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 15.8 | United Kingdom | 2020 |
| SRR12512274 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.66 | United Kingdom | 2020 |
| SRR12512275 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1 | United Kingdom | 2020 |
| SRR12512276 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.83 | United Kingdom | 2020 |
| SRR12512277 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.91 | Italy | 2020 |
| SRR12512278 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.68 | United Kingdom | 2020 |
| SRR12512279 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.05 | United Kingdom | 2020 |
| SRR12512281 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.04 | United Kingdom | 2020 |
| SRR12512282 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.33 | United Kingdom | 2020 |
| SRR12512283 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 4.24 | United Kingdom | 2020 |
| SRR12512284 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 7.44 | United Kingdom | 2020 |
| SRR12512285 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 4.06 | United Kingdom | 2020 |
| SRR12512286 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.75 | United Kingdom | 2020 |
| SRR12512287 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.35 | United Kingdom | 2020 |
| SRR12512288 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.87 | Italy | 2020 |
| SRR12512289 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.6 | United Kingdom | 2020 |
| SRR12512290 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 3.39 | United Kingdom | 2020 |
| SRR12512293 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 3.45 | Singapore | 2020 |
| SRR12512294 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.81 | Singapore | 2020 |
| SRR12512297 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 12.6 | Singapore | 2020 |
| SRR12512298 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.75 | Singapore | 2020 |
| SRR12512299 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.01 | United Kingdom | 2020 |
| SRR12512301 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 19.5 | Malaysia | 2020 |
| SRR12512302 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 3.47 | Malaysia | 2020 |
| SRR12512305 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.28 | Malaysia | 2020 |
| SRR12512306 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.22 | Singapore | 2020 |
| SRR12512307 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 4.7 | Italy | 2020 |
| SRR12512309 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 3.46 | Singapore | 2020 |
| SRR12512310 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.21 | Singapore | 2020 |
| SRR12512311 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.31 | Singapore | 2020 |
| SRR12512314 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.24 | Singapore | 2020 |
| SRR12512315 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.06 | Singapore | 2020 |
| SRR12512318 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.87 | Singapore | 2020 |
| SRR12512319 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.16 | Singapore | 2020 |
| SRR12512320 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.26 | Italy | 2020 |
| SRR12512321 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.64 | Singapore | 2020 |
| SRR12512323 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.12 | Singapore | 2020 |
| SRR12512327 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 6.17 | United Kingdom | 2020 |
| SRR12512329 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 30.6 | United Kingdom | 2020 |
| SRR12512330 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1 | United Kingdom | 2020 |
| SRR12512332 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 5.66 | United Kingdom | 2020 |
| SRR12512334 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.47 | United Kingdom | 2020 |
| SRR12512335 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 4.15 | United Kingdom | 2020 |
| SRR12512336 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 54.4 | United Kingdom | 2020 |
| SRR12512338 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 12.3 | United Kingdom | 2020 |
| SRR12512339 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 29.2 | Italy | 2020 |
| SRR12512340 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 13.6 | Italy | 2020 |
| SRR12512341 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 3.15 | United Kingdom | 2020 |
| SRR12512344 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.91 | United Kingdom | 2020 |
| SRR12512345 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 9.51 | United Kingdom | 2020 |
| SRR12512347 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.79 | United Kingdom | 2020 |
| SRR12512348 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.45 | United Kingdom | 2020 |
| SRR12512349 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 12.2 | United Kingdom | 2020 |
| SRR12512350 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.18 | Italy | 2020 |
| SRR12512352 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 3.35 | United Kingdom | 2020 |
| SRR12512355 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.79 | United Kingdom | 2020 |
| SRR12512357 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.04 | United Kingdom | 2020 |
| SRR12512358 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 25.2 | United Kingdom | 2020 |
| SRR12512360 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 1.36 | United Kingdom | 2020 |
| SRR12512361 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.16 | Italy | 2020 |
| SRR12512362 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 14.1 | United Kingdom | 2020 |
| SRR12512364 | PRJNA590225 | Bronchiectasis | Bronchiectasis | Lower Respiratory Tract | Illumina HiSeq 2500 | WMS | PAIRED | 2.31 | United Kingdom | 2020 |
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