BioProject - MDPD

BioProject ID: PRJNA839581

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA839581

Attribute	Value
SRA Study ID	SRP376139
Disease(s)	COVID-19 → COVID-19 SARS-CoV-2 Positive Control → COVID-19 SARS-CoV-2 Negative
Isolation Source	Nasopharyngeal Swab
Biome	Upper Respiratory Tract
Assay Type	Amplicon-16S
Instrument	Illumina MiSeq
Library Layout	PAIRED
Year	2020
Processed Runs	53
Variable Region	V3-V4
PMID	35873175
Country	Italy

Analyses

Taxonomic profile
Discriminant analysis
Multivariate association analysis
Microbial co-occurrence analysis

Download

Biom file

Summary of runs

Total number of processed runs found in the database for this BioProject ID = 53

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Run ID	BioProject ID	Disease	Disease Sub-group	Biome	Instrument	Assay Type	Library Layout	Processed Reads (%)	Country	Year
SRR19317340	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	16	Italy	2022
SRR19317341	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	18	Italy	2022
SRR19317342	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	14	Italy	2022
SRR19317343	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	25	Italy	2022
SRR19317344	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	19	Italy	2022
SRR19317345	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	24	Italy	2022
SRR19317346	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	26	Italy	2022
SRR19317347	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	26	Italy	2022
SRR19317348	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	12	Italy	2022
SRR19317349	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	22	Italy	2022
SRR19317350	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	21	Italy	2022
SRR19317351	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	25	Italy	2022
SRR19317352	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	21	Italy	2022
SRR19317353	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	23	Italy	2022
SRR19317354	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	22	Italy	2022
SRR19317355	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	17	Italy	2022
SRR19317356	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	21	Italy	2022
SRR19317357	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	23	Italy	2022
SRR19317358	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	26	Italy	2022
SRR19317359	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	22	Italy	2022
SRR19317360	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	24	Italy	2022
SRR19317361	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	19	Italy	2022
SRR19317362	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	21	Italy	2022
SRR19317363	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	15	Italy	2022
SRR19317364	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	18	Italy	2022
SRR19317365	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	22	Italy	2022
SRR19317366	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	21	Italy	2022
SRR19317367	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	22	Italy	2022
SRR19317368	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	24	Italy	2022
SRR19317369	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	24	Italy	2022
SRR19317370	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	20	Italy	2022
SRR19317371	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	24	Italy	2022
SRR19317372	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	19	Italy	2022
SRR19317373	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	17	Italy	2022
SRR19317374	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	14	Italy	2022
SRR19317375	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	19	Italy	2022
SRR19317376	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	22	Italy	2022
SRR19317377	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	13	Italy	2022
SRR19317378	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	20	Italy	2022
SRR19317379	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	17	Italy	2022
SRR19317380	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	23	Italy	2022
SRR19317381	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	22	Italy	2022
SRR19317382	PRJNA839581	Control	COVID-19 SARS-CoV-2 Negative	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	26	Italy	2022
SRR19317383	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	18	Italy	2022
SRR19317384	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	20	Italy	2022
SRR19317385	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	18	Italy	2022
SRR19317386	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	13	Italy	2022
SRR19317387	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	17	Italy	2022
SRR19317388	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	15	Italy	2022
SRR19317389	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	18	Italy	2022
SRR19317391	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	15	Italy	2022
SRR19317392	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	22	Italy	2022
SRR19317393	PRJNA839581	COVID-19	COVID-19 SARS-CoV-2 Positive	Upper Respiratory Tract	Illumina MiSeq	Amplicon-16S	PAIRED	21	Italy	2022

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