BioProject - MDPD

BioProject ID: PRJNA846291

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA846291

Attribute	Value
SRA Study ID	SRP379105
Disease(s)	Cystic Fibrosis → Cystic Fibrosis
Isolation Source	Sputum; BALF; Oropharyngeal Swab
Biome	Lower Respiratory Tract; Upper Respiratory Tract
Assay Type	WMS
Instrument	Illumina NextSeq 500
Library Layout	PAIRED
Year	2022
Processed Runs	98
Variable Region
PMID	36168550
Country	USA

Analyses

Taxonomic profile
Discriminant analysis
Microbial co-occurrence analysis

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Biom file

Summary of runs

Total number of processed runs found in the database for this BioProject ID = 98

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Run ID	BioProject ID	Disease	Disease Sub-group	Biome	Instrument	Assay Type	Library Layout	Processed Reads (%)	Country	Year
SRR19579576	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	79.4	USA	2022
SRR19579577	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	92.4	USA	2022
SRR19579578	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	74.6	USA	2022
SRR19579579	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	63.9	USA	2022
SRR19579580	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	93.1	USA	2022
SRR19579581	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	93.8	USA	2022
SRR19579582	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	91.2	USA	2022
SRR19579583	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	64.2	USA	2022
SRR19579584	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	72.3	USA	2022
SRR19579585	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	90.3	USA	2022
SRR19579586	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	89.5	USA	2022
SRR19579587	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	83.1	USA	2022
SRR19579588	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	58.4	USA	2022
SRR19579589	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	66.6	USA	2022
SRR19579590	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	92	USA	2022
SRR19579591	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	67.3	USA	2022
SRR19579592	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	72.5	USA	2022
SRR19579593	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	70.5	USA	2022
SRR19579594	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	94.8	USA	2022
SRR19579595	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	97.1	USA	2022
SRR19579596	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	78.1	USA	2022
SRR19579597	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	86.9	USA	2022
SRR19579598	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	90.5	USA	2022
SRR19579599	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	87.9	USA	2022
SRR19579600	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	73.5	USA	2022
SRR19579601	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	71.2	USA	2022
SRR19579602	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	36.2	USA	2022
SRR19579603	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	83.1	USA	2022
SRR19579604	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	58.6	USA	2022
SRR19579605	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	95.3	USA	2022
SRR19579606	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	27.5	USA	2022
SRR19579607	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	80.8	USA	2022
SRR19579608	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	74.4	USA	2022
SRR19579609	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	94.4	USA	2022
SRR19579610	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	84.5	USA	2022
SRR19579611	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	89	USA	2022
SRR19579612	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	95.4	USA	2022
SRR19579613	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	89.3	USA	2022
SRR19579614	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	52.8	USA	2022
SRR19579615	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	31.3	USA	2022
SRR19579616	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	86.1	USA	2022
SRR19579617	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	81.6	USA	2022
SRR19579618	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	89.3	USA	2022
SRR19579619	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	33.3	USA	2022
SRR19579620	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	73.5	USA	2022
SRR19579621	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	74.2	USA	2022
SRR19579622	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	76.7	USA	2022
SRR19579623	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	79.3	USA	2022
SRR19579624	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	80.1	USA	2022
SRR19579625	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	55.4	USA	2022
SRR19579626	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	79.2	USA	2022
SRR19579627	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	72.3	USA	2022
SRR19579628	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	51.9	USA	2022
SRR19579629	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	82	USA	2022
SRR19579630	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	78.6	USA	2022
SRR19579631	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	85	USA	2022
SRR19579632	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	57	USA	2022
SRR19579633	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	81.7	USA	2022
SRR19579634	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	82.7	USA	2022
SRR19579635	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	47.5	USA	2022
SRR19579636	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	91.2	USA	2022
SRR19579637	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	82.4	USA	2022
SRR19579638	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	66	USA	2022
SRR19579639	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	91	USA	2022
SRR19579640	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	79.3	USA	2022
SRR19579641	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	88.9	USA	2022
SRR19579642	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	80.6	USA	2022
SRR19579643	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	82	USA	2022
SRR19579644	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	82.1	USA	2022
SRR19579645	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	82.3	USA	2022
SRR19579646	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	75.4	USA	2022
SRR19579647	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	74.3	USA	2022
SRR19579648	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	74.3	USA	2022
SRR19579649	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	71.4	USA	2022
SRR19579650	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	78.9	USA	2022
SRR19579651	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	84.3	USA	2022
SRR19579652	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	82.8	USA	2022
SRR19579653	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	74.7	USA	2022
SRR19579654	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	54.6	USA	2022
SRR19579655	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	71.2	USA	2022
SRR19579656	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	79	USA	2022
SRR19579657	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	69.5	USA	2022
SRR19579658	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	83.2	USA	2022
SRR19579659	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	58.3	USA	2022
SRR19579660	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	88.1	USA	2022
SRR19579661	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	84.1	USA	2022
SRR19579662	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	82.3	USA	2022
SRR19579663	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	79.3	USA	2022
SRR19579664	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	74.9	USA	2022
SRR19579665	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Lower Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	74.1	USA	2022
SRR19579666	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	91.4	USA	2022
SRR19579667	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	44.5	USA	2022
SRR19579668	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	27	USA	2022
SRR19579669	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	21.4	USA	2022
SRR19579670	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	46.9	USA	2022
SRR19579671	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	70.6	USA	2022
SRR19579672	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	57.2	USA	2022
SRR19579673	PRJNA846291	Cystic Fibrosis	Cystic Fibrosis	Upper Respiratory Tract	Illumina NextSeq 500	WMS	PAIRED	76.3	USA	2022

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