BioProject ID: PRJNA850148
https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA850148 
| Attribute | Value |
|---|---|
| SRA Study ID | SRP382220 |
| Disease(s) | COVID-19 → COVID-19 Healthy → Healthy |
| Isolation Source | Oropharyngeal Swab |
| Biome | Upper Respiratory Tract |
| Assay Type | Amplicon-16S |
| Instrument | Illumina NovaSeq 6000 |
| Library Layout | PAIRED |
| Year | 2022 |
| Processed Runs | 67 |
| Variable Region | V3-V4 |
| PMID | 37905804 |
| Country | India |
Analyses
| Taxonomic profile | |
|---|---|
| Discriminant analysis | |
| Multivariate association analysis | |
| Microbial co-occurrence analysis |
Download
| Biom file |
|---|
Summary of runs
Total number of processed runs found in the database for this BioProject ID = 67
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| Run ID | BioProject ID | Disease | Disease Sub-group | Biome | Instrument | Assay Type | Library Layout | Processed Reads (%) | Country | Year |
|---|---|---|---|---|---|---|---|---|---|---|
| SRR19732411 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732412 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732413 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732414 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732415 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732416 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732417 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732418 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732419 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732420 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732421 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732422 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732423 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732424 | PRJNA850148 | Healthy | Healthy | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732425 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732426 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732427 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732428 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732429 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732430 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732431 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 40 | India | 2022 |
| SRR19732432 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732433 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 40 | India | 2022 |
| SRR19732434 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732435 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 40 | India | 2022 |
| SRR19732436 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 40 | India | 2022 |
| SRR19732437 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 40 | India | 2022 |
| SRR19732438 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 50 | India | 2022 |
| SRR19732439 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732440 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 50 | India | 2022 |
| SRR19732441 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 40 | India | 2022 |
| SRR19732442 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 40 | India | 2022 |
| SRR19732443 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732444 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732445 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732446 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 10 | India | 2022 |
| SRR19732447 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732448 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732449 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732450 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732451 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732452 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732453 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732454 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732455 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732456 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732457 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732458 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732459 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732460 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732461 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732462 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732463 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732464 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732465 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732466 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732467 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732468 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732469 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 30 | India | 2022 |
| SRR19732470 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732471 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732472 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732473 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732474 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732475 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732476 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
| SRR19732477 | PRJNA850148 | COVID-19 | COVID-19 | Upper Respiratory Tract | Illumina NovaSeq 6000 | Amplicon-16S | PAIRED | 20 | India | 2022 |
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