BioProject - MDPD

BioProject ID: PRJNA852674

https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA852674

Attribute	Value
SRA Study ID	SRP403785
Disease(s)	Chronic Obstructive Pulmonary Disease (COPD) → COPD Stable Chronic Obstructive Pulmonary Disease (COPD) → COPD Exacerbation Healthy → Healthy Non Smoker Healthy → Healthy Smoker
Isolation Source	Sputum
Biome	Lower Respiratory Tract
Assay Type	WMS
Instrument	Illumina NovaSeq 6000
Library Layout	PAIRED
Year	2022
Processed Runs	135
Variable Region
PMID	35995842
Country	China

Analyses

Taxonomic profile
Discriminant analysis
Multivariate association analysis
Microbial co-occurrence analysis

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Biom file

Summary of runs

Total number of processed runs found in the database for this BioProject ID = 135

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Run ID	BioProject ID	Disease	Disease Sub-group	Biome	Instrument	Assay Type	Library Layout	Processed Reads (%)	Country	Year
SRR21995896	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	8.58	China	2022
SRR21995897	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	49.3	China	2022
SRR21995898	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	34.5	China	2022
SRR21995899	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	35.3	China	2022
SRR21995900	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	39	China	2022
SRR21995901	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	23.9	China	2022
SRR21995902	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	3.74	China	2022
SRR21995903	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	16.4	China	2022
SRR21995904	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	33.9	China	2022
SRR21995905	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	24	China	2022
SRR21995906	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	27.1	China	2022
SRR21995907	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	77	China	2022
SRR21995908	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	25.6	China	2022
SRR21995909	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	37.3	China	2022
SRR21995910	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	30.2	China	2022
SRR21995911	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	13.9	China	2022
SRR21995912	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	23.2	China	2022
SRR21995913	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	23.2	China	2022
SRR21995914	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	54.3	China	2022
SRR21995915	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	22.5	China	2022
SRR21995916	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	63.1	China	2022
SRR21995917	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	45.9	China	2022
SRR21995918	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	16.4	China	2022
SRR21995919	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	35.4	China	2022
SRR21995920	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	20.1	China	2022
SRR21995921	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	19.8	China	2022
SRR21995922	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	31.4	China	2022
SRR21995923	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	10.2	China	2022
SRR21995924	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	3.44	China	2022
SRR21995925	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	1.69	China	2022
SRR21995926	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	18.8	China	2022
SRR21995927	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	43.9	China	2022
SRR21995928	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	29.3	China	2022
SRR21995929	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	4.33	China	2022
SRR21995930	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	38.9	China	2022
SRR21995931	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	58.5	China	2022
SRR21995932	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	5.37	China	2022
SRR21995933	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	63.3	China	2022
SRR21995934	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	17	China	2022
SRR21995935	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	53.7	China	2022
SRR21995936	PRJNA852674	Healthy	Healthy Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	49.4	China	2022
SRR21995937	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	27.1	China	2022
SRR21995938	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	5.04	China	2022
SRR21995939	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	5.81	China	2022
SRR21995940	PRJNA852674	Healthy	Healthy Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	35.1	China	2022
SRR21995941	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	57.5	China	2022
SRR21995942	PRJNA852674	Healthy	Healthy Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	29.7	China	2022
SRR21995943	PRJNA852674	Healthy	Healthy Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	15.1	China	2022
SRR21995944	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	2.12	China	2022
SRR21995945	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	6.53	China	2022
SRR21995946	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	9.78	China	2022
SRR21995947	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	16.4	China	2022
SRR21995948	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	20.7	China	2022
SRR21995949	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	3.53	China	2022
SRR21995950	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	16.7	China	2022
SRR21995951	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	1.68	China	2022
SRR21995952	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	5.84	China	2022
SRR21995953	PRJNA852674	Healthy	Healthy Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	26.5	China	2022
SRR21995954	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	11	China	2022
SRR21995955	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	1.1	China	2022
SRR21995956	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	3.05	China	2022
SRR21995957	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	16.6	China	2022
SRR21995958	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	22.4	China	2022
SRR21995959	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	2.13	China	2022
SRR21995960	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	16.9	China	2022
SRR21995961	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	11.5	China	2022
SRR21995962	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	30.1	China	2022
SRR21995963	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	81.5	China	2022
SRR21995964	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	6.23	China	2022
SRR21995965	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	53.7	China	2022
SRR21995966	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	35.7	China	2022
SRR21995967	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	12.6	China	2022
SRR21995968	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	6.21	China	2022
SRR21995969	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	21.4	China	2022
SRR21995970	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	36.1	China	2022
SRR21995971	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	71.2	China	2022
SRR21995972	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	9.81	China	2022
SRR21995973	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	32.4	China	2022
SRR21995974	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	17.5	China	2022
SRR21995975	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	17.2	China	2022
SRR21995976	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	7.87	China	2022
SRR21995977	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	44.3	China	2022
SRR21995978	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	16.9	China	2022
SRR21995979	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	49.4	China	2022
SRR21995980	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	24.3	China	2022
SRR21995981	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	7.68	China	2022
SRR21995982	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	27.6	China	2022
SRR21995983	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	9.23	China	2022
SRR21995984	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	14	China	2022
SRR21995985	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	13	China	2022
SRR21995986	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	42.2	China	2022
SRR21995987	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	1.18	China	2022
SRR21995988	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	18.5	China	2022
SRR21995989	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	55.6	China	2022
SRR21995990	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	66.5	China	2022
SRR21995991	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Exacerbation	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	58.4	China	2022
SRR21995992	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	35.3	China	2022
SRR21995993	PRJNA852674	Healthy	Healthy Non Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	37.6	China	2022
SRR21995994	PRJNA852674	Healthy	Healthy Smoker	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	13.9	China	2022
SRR21995995	PRJNA852674	Chronic Obstructive Pulmonary Disease (COPD)	COPD Stable	Lower Respiratory Tract	Illumina NovaSeq 6000	WMS	PAIRED	6.57	China	2022

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