piRNAQuest v2 other

Welcome to piRNAQuest V.2

piRNAQuest V.2 is a comprehensive updated resource for piRNAs of 28 species with 92,77,689 unique piRNAs. A definitive objective of piRNAQuest V.2 is to provide data on fundamental piRNA features reliant on their genomic location, with additional details on their overlap with Repeat elements, Pseudogenes and Syntenic regions. Density based cluster prediction and piRNA expression corresponding to different tissues and diseases have been added as new features in the latest version. Moreover, we are predicting piRNA targets within gene and long non coding RNAs.



What’s New?

     Features

  • piRNA annotation of 25 new species and updated information for the three species from the previous version

  • Ping-pong pattern visualization

  • The density based clustering approach of piRNAs

  • piRNA expression in Normal and Diseased systems

  • piRNA Target prediction within gene and lncRNAs

     Tools

  • Ping pong pattern recognition

  • piRNA Target prediction

  • piRNA Cluster prediction

 

Cite: Byapti Ghosh, Arijita Sarkar, Sudip Mondal, Namrata Bhattacharya, Sunirmal Khatua & Zhumur Ghosh (2022) piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species, RNA Biology, DOI: 10.1080/15476286.2021.2010960

  • This is a part of the ongoing work pursued in DBT funded Bioinformatics Center Project at Bose Institute

    • Best viewed in Mozilla Firefox Screen resolution: 1024 x 768