Photo


Dr. Sudipto Saha

Associate Professor
Ramalingaswami fellow
Division of Bioinformatics

Home
Research
Databases
Web Servers
People
Publications
Gallery
Teaching
News/Updates

Functional Interactomics Lab
Bose Institute

Logo

Databases

DRAGdb: Drug Resistance Associated Genes
DRAGdb, a manually curated database for mutational data across bacterial pathogenic strains with reference to DRAGs reported in Mycobacterium tuberculosis.
PSCRIdb: A database of regulatory interactions in Pluripotent Stem Cells
PSCRIdb, a manually curated database composed of protein-protein, protein-DNA, gene-gene and miRNA-mRNA interaction datasets in human and mouse pluripotent stem cells(PSCs).
MYCbase: A Database of MYC
MYCbase is a manually-curated and web-based repository that provides comprehensive information on myc gene mutations, documented from various publications.

BMC Bioinformatics, 2017 Apr 28;18(1):224.
Database of Allergy and Asthma Biomarkers (DAAB)
DAAB is an online database of Allergy And Asthma Biomarkers compiled by manual curation of literature.

Clin Exp Allergy .2015. doi: 10.1111/cea.12569.
Linear Motif mediated Protein Protein Interaction Database(LMPID)
LMPID is a publicly available web-based relational database of experimentally verified linear motif instances mediating Protein-Protein Interactions (PPIs) from all organisms, compiled by manual curation of existing literature.

Database (Oxford). 2015.
Ring-Hydroxylating Oxygenase database (RHOBASE)
The Ring-Hydroxylating Oxygenase database, abbreviated as “RHObase”, is a web based, manually curated and searchable database which provides comprehensive information on all biochemically studied and characterized bacterial Rieske-type RHOs.

Environ Microbiol Rep. 2014 Oct;6(5):519-23.
PPIMdb: database of small molecules that inhibit orthosteric Protein-Protein Interactions (PPIs)
This database contains both experimentally verified and predicted compounds for three popular PPI complexes Such as, Mdm2/P53, Bcl2/Bak and c-Myc/Max.