BioProject ID: PRJNA726058
https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA726058 
| Attribute | Value |
|---|---|
| SRA Study ID | SRP316859 |
| Disease(s) | Chronic Obstructive Pulmonary Disease (COPD) → COPD GOLD 1 Chronic Obstructive Pulmonary Disease (COPD) → COPD GOLD 2 Chronic Obstructive Pulmonary Disease (COPD) → COPD GOLD 3 Control → Non COPD |
| Isolation Source | Sputum |
| Biome | Lower Respiratory Tract |
| Assay Type | Amplicon-16S |
| Instrument | Illumina MiSeq |
| Library Layout | PAIRED |
| Year | 2023 |
| Processed Runs | 200 |
| Variable Region | V3-V4 |
| PMID | 36790203 |
| Country | Uganda |
Analyses
| Taxonomic profile | |
|---|---|
| Discriminant analysis | |
| Multivariate association analysis | |
| Microbial co-occurrence analysis |
Download
| Biom file |
|---|
Summary of runs
Total number of processed runs found in the database for this BioProject ID = 200
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| Run ID | BioProject ID | Disease | Disease Sub-group | Biome | Instrument | Assay Type | Library Layout | Processed Reads (%) | Country | Year |
|---|---|---|---|---|---|---|---|---|---|---|
| SRR14355450 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 34 | Uganda | 2023 |
| SRR14355451 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 38 | Uganda | 2023 |
| SRR14355452 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355453 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 16 | Uganda | 2023 |
| SRR14355454 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 36 | Uganda | 2023 |
| SRR14355455 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 29 | Uganda | 2023 |
| SRR14355456 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 37 | Uganda | 2023 |
| SRR14355457 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355458 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 44 | Uganda | 2023 |
| SRR14355459 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 39 | Uganda | 2023 |
| SRR14355460 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355461 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 34 | Uganda | 2023 |
| SRR14355462 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355463 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 31 | Uganda | 2023 |
| SRR14355464 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355465 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355466 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 48 | Uganda | 2023 |
| SRR14355467 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 26 | Uganda | 2023 |
| SRR14355468 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 31 | Uganda | 2023 |
| SRR14355469 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 28 | Uganda | 2023 |
| SRR14355470 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 35 | Uganda | 2023 |
| SRR14355471 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 40 | Uganda | 2023 |
| SRR14355472 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355473 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355474 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 29 | Uganda | 2023 |
| SRR14355475 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 34 | Uganda | 2023 |
| SRR14355476 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 31 | Uganda | 2023 |
| SRR14355477 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355478 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355479 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355480 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 34 | Uganda | 2023 |
| SRR14355481 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355482 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355483 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355484 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 36 | Uganda | 2023 |
| SRR14355485 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 31 | Uganda | 2023 |
| SRR14355486 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 37 | Uganda | 2023 |
| SRR14355487 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 29 | Uganda | 2023 |
| SRR14355488 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355489 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 37 | Uganda | 2023 |
| SRR14355490 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 44 | Uganda | 2023 |
| SRR14355491 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 35 | Uganda | 2023 |
| SRR14355492 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355493 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 35 | Uganda | 2023 |
| SRR14355494 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 26 | Uganda | 2023 |
| SRR14355495 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 34 | Uganda | 2023 |
| SRR14355496 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 41 | Uganda | 2023 |
| SRR14355497 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 35 | Uganda | 2023 |
| SRR14355498 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355499 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355500 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 37 | Uganda | 2023 |
| SRR14355501 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 43 | Uganda | 2023 |
| SRR14355502 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355503 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 41 | Uganda | 2023 |
| SRR14355504 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 46 | Uganda | 2023 |
| SRR14355505 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 29 | Uganda | 2023 |
| SRR14355506 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 24 | Uganda | 2023 |
| SRR14355507 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 28 | Uganda | 2023 |
| SRR14355508 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355509 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 29 | Uganda | 2023 |
| SRR14355510 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 29 | Uganda | 2023 |
| SRR14355511 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 28 | Uganda | 2023 |
| SRR14355512 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 37 | Uganda | 2023 |
| SRR14355513 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 43 | Uganda | 2023 |
| SRR14355514 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 31 | Uganda | 2023 |
| SRR14355515 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355516 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355517 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 39 | Uganda | 2023 |
| SRR14355518 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 17 | Uganda | 2023 |
| SRR14355519 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 43 | Uganda | 2023 |
| SRR14355520 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355521 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 42 | Uganda | 2023 |
| SRR14355522 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 33 | Uganda | 2023 |
| SRR14355523 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355524 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 22 | Uganda | 2023 |
| SRR14355525 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 41 | Uganda | 2023 |
| SRR14355526 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 41 | Uganda | 2023 |
| SRR14355527 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 40 | Uganda | 2023 |
| SRR14355528 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 41 | Uganda | 2023 |
| SRR14355529 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 21 | Uganda | 2023 |
| SRR14355530 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 28 | Uganda | 2023 |
| SRR14355531 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355532 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 24 | Uganda | 2023 |
| SRR14355533 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 38 | Uganda | 2023 |
| SRR14355534 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 34 | Uganda | 2023 |
| SRR14355535 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 26 | Uganda | 2023 |
| SRR14355536 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355537 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 26 | Uganda | 2023 |
| SRR14355538 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 30 | Uganda | 2023 |
| SRR14355539 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 29 | Uganda | 2023 |
| SRR14355540 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 28 | Uganda | 2023 |
| SRR14355541 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 26 | Uganda | 2023 |
| SRR14355542 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 3 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 28 | Uganda | 2023 |
| SRR14355543 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 27 | Uganda | 2023 |
| SRR14355544 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355545 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 25 | Uganda | 2023 |
| SRR14355546 | PRJNA726058 | Control | Non COPD | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 40 | Uganda | 2023 |
| SRR14355547 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 29 | Uganda | 2023 |
| SRR14355548 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 2 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 32 | Uganda | 2023 |
| SRR14355549 | PRJNA726058 | Chronic Obstructive Pulmonary Disease (COPD) | COPD GOLD 1 | Lower Respiratory Tract | Illumina MiSeq | Amplicon-16S | PAIRED | 38 | Uganda | 2023 |
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